RetrogeneDB ID: | retro_tbel_4024 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_54678:197..710(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX1 | ||
Ensembl ID: | ENSTBEG00000015997 | ||
Aliases: | None | ||
Description: | peroxiredoxin 1 [Source:HGNC Symbol;Acc:9352] |
Percent Identity: | 91.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSGNAKIGYPAPNFKATAVMPDGQFKDVSLSDYKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLN |
MSSGNAKIGYPAPNFKAT.VMPDGQFKD.SLS.YKGKYVVFFFYPLDFTFVCPTEIIAF.DRA.EFKKL. | |
Retrocopy | MSSGNAKIGYPAPNFKATGVMPDGQFKDTSLSEYKGKYVVFFFYPLDFTFVCPTEIIAFRDRADEFKKLT |
Parental | CQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILR |
CQVIG.SVDSHFCHL.WINTPKKQG.LGPMNIPL.SDPKRTIAQDYGVLKADEGISFRGLFIIDDKGIL. | |
Retrocopy | CQVIGVSVDSHFCHLPWINTPKKQGPLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILQ |
Parental | QITVNDLPVGRSVDETLRLVQAFQFTDKHGE |
QIT.NDLPVGRSVDE..RLVQAFQFTDKHGE | |
Retrocopy | QITINDLPVGRSVDEIIRLVQAFQFTDKHGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |