RetrogeneDB ID: | retro_tbel_33 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_117841:41033..41561(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000008417 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTBEG00000014584 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQLTHQLDLFPECTVTLLLFKDVKNAGDLRKKAMEGTISGSLINPTVVVDPFQILVAANKAVHLYKLGKM |
MQL.HQLD.F.EC.VTLLLFK.VKNAGDL.KK.MEGTI.GSLINPTVVVDPFQILVA.NKAV.LYKLGKM | |
Retrocopy | MQLAHQLDIFLECMVTLLLFKNVKNAGDLGKKVMEGTINGSLINPTVVVDPFQILVATNKAVQLYKLGKM |
Parental | KTRTLSTEIIFNLSPNNNISDALKKFGISANDTSVLIVYIEEGEKQINPEYLISQVDGHQVSLKDLPEIT |
KTR.LSTEIIFNLSPNNNIS.ALKKFGISANDTSVLIVYIEEGEKQINPEYLISQVDGHQVSLKDLPEIT | |
Retrocopy | KTRILSTEIIFNLSPNNNISKALKKFGISANDTSVLIVYIEEGEKQINPEYLISQVDGHQVSLKDLPEIT |
Parental | NITEVKKIYKLSSQEERIGTLLDGIICRMSTKDVL |
N..E.KKIYKLSSQEERIGTLLDGII.RMSTKDVL | |
Retrocopy | NVKEIKKIYKLSSQEERIGTLLDGIIYRMSTKDVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012021 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004162 | 3 retrocopies | |
Homo sapiens | ENSG00000144034 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009062 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000030805 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016950 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000300 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016251 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000032893 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012292 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012419 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000016406 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000014584 | 2 retrocopies |
retro_tbel_33 , retro_tbel_3630,
|
Vicugna pacos | ENSVPAG00000007934 | 2 retrocopies |