Parental gene:

TPRKB, ENSCJAG00000004162

Aliases:None
Description:TP53RK binding protein [Source:HGNC Symbol;Acc:24259]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:33064543..33070692(+)


>ENSCJAG00000004162
ATGCAGTTAACACATCAGCTGGACCTATTTCCTGAATGCAGAGTGACCCTTCTGTTATTTAAAGATGTCAAAAATGCAGG
AGATTTGAGAAGAAAGGCCATGGAAGGGACCATCGATGGATCACTGATAAATCCTACAGTGATTGTCGATCCATTTCAGA
TACTTGTGGCAGCAAACAAAGCAGTTCACCTCTACAAACTGGGAAAAATGAAGACAAGAACTCTATCTACTGAAATTATT
TACAACCTTTCCCCAAATAACAATATTTCAGAGGCTTTGAAAAAATTTGGTATCTCGGGAAATGACACTTCAATTCTAAT
TGTTTACATTGAAGAGGGAGAAAAACAGATAAATCAAGAATACCTGATATCTCAAGTAGAAGGTCATCAGGTTTCTCTGG
AAAATCTTCCTGAAATAACAAATATTACAGAAGTCAAAAAGATATATAAACTCTCTTCACAAGAAGAACGTATTGGGACA
TTATTGGATGGTATCATTTGTAGAATGTCAACAAAAGATGTTTTGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 4 .03 RPM
SRP051959_skeletal_muscle 10 .02 RPM
SRP051959_lymph_node 4 .91 RPM
SRP051959_lung 3 .38 RPM
SRP051959_liver 5 .96 RPM
SRP051959_kidney 4 .88 RPM
SRP051959_heart 6 .51 RPM
SRP051959_colon 5 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012021 ortholog_one2many 1 retrogene
retro_chof_35,
Homo sapiens ENSG00000144034 ortholog_one2one 1 retrogene
retro_hsap_552,
Gorilla gorilla ENSGGOG00000009062 ortholog_one2one 1 retrogene
retro_ggor_501,
Macaca mulatta ENSMMUG00000030805 ortholog_one2many 1 retrogene
retro_mmul_1571,
Monodelphis domestica ENSMODG00000016950 ortholog_one2many 2 retrogenes
retro_mdom_1264, retro_mdom_465,
Nomascus leucogenys ENSNLEG00000000300 ortholog_one2one 2 retrogenes
retro_nleu_2021, retro_nleu_957,
Oryctolagus cuniculus ENSOCUG00000016251 ortholog_one2many 2 retrogenes
retro_ocun_519, retro_ocun_769,
Otolemur garnettii ENSOGAG00000032893 ortholog_one2one 2 retrogenes
retro_ogar_523, retro_ogar_849,
Pongo abelii ENSPPYG00000012292 ortholog_one2one 1 retrogene
retro_pabe_509,
Pteropus vampyrus ENSPVAG00000012419 ortholog_one2one 1 retrogene
retro_pvam_75,
Ictidomys tridecemlineatus ENSSTOG00000016406 ortholog_one2one 4 retrogenes
retro_itri_1613, retro_itri_453, retro_itri_918, retro_itri_919,
Tupaia belangeri ENSTBEG00000014584 ortholog_many2many 2 retrogenes
retro_tbel_33, retro_tbel_3630,
Vicugna pacos ENSVPAG00000007934 ortholog_one2one 2 retrogenes
retro_vpac_149, retro_vpac_192,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1999 51.59 78.98
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_2867 68.52 90.86
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cjac_3065 90.91 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000004162 retrocopies