RetrogeneDB ID: | retro_tbel_4575 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_91482:6618..6954(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000014015 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP1S2 | ||
Ensembl ID: | ENSTBEG00000008834 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 1, sigma 2 subunit [Source:HGNC Symbol;Acc:560] |
Percent Identity: | 81.9 % |
Parental protein coverage: | 72.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFG |
.KKKITRELVQ..LA.KP.M.SFLEWR.LK.VYKRYASLYFCC.IED..NELITLEIIH.Y.ELLDKY.G | |
Retrocopy | QKKKITRELVQIILAQKPEMYSFLEWRGLKTVYKRYASLYFCCTIEDWENELITLEIIHLYAELLDKYLG |
Parental | SVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQ |
SVCELDII.NFEKAYFILD.FLLGGEVQETSKK....AIEQA.LLQ | |
Retrocopy | SVCELDIIYNFEKAYFILDVFLLGGEVQETSKK----AIEQANLLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020420 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004393 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013888 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017197 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000011342 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000000733 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010218 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000117 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013119 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000012142 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008517 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008834 | 2 retrocopies |
retro_tbel_2173, retro_tbel_4575 ,
|
Tarsius syrichta | ENSTSYG00000005290 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007642 | 1 retrocopy |