Parental gene:

AP1S2, ENSBTAG00000020420

Aliases:None
Description:AP-1 complex subunit sigma-2 [Source:UniProtKB/Swiss-Prot;Acc:Q3ZBS3]
Organism:Cow (Bos taurus)
Coordinates:X:134965646..134991291(+)


>ENSBTAG00000020420
ATGCAGTTTATGTTGCTTTTTAGTCGTCAAGGAAAGCTTCGACTGCAGAAATGGTATGTCCCGTTATCAGACAAAGAAAA
GAAAAAGATCACAAGAGAACTTGTTCAAACCGTTTTAGCACGGAAACCTAAAATGTGCAGCTTTCTTGAATGGAGAGATC
TGAAGATTGTTTACAAAAGATATGCCAGTCTGTATTTTTGCTGTGCTATTGAGGACCAGGACAATGAACTAATTACCCTG
GAAATAATTCATCGTTACGTGGAATTACTTGACAAGTATTTTGGCAGTGTGTGTGAACTTGATATCATTTTTAATTTTGA
GAAGGCTTATTTTATTTTGGATGAGTTTCTTTTGGGAGGAGAAGTTCAGGAAACATCCAAGAAGAATGTCCTTAAAGCAA
TTGAGCAGGCTGATCTACTGCAGGAGGATGCAAAAGAAGCTGAAACCCCACGTAGTGTTCTTGAAGAAATTGGACTGACA
TAA

Library Parental gene expression (RPM)
SRP017611_brain 11 .01 RPM
SRP017611_kidney 5 .22 RPM
SRP017611_liver 0 .76 RPM
ERP005899_muscle 6 .55 RPM
ERP005899_liver 0 .94 RPM
SRP030211_testis 12 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004393 possible_ortholog 1 retrogene
retro_cjac_2312,
Dasypus novemcinctus ENSDNOG00000013888 ortholog_one2one 1 retrogene
retro_dnov_1786,
Monodelphis domestica ENSMODG00000017197 ortholog_one2one 7 retrogenes
retro_mdom_1189, retro_mdom_1329, retro_mdom_1441, retro_mdom_1470, retro_mdom_1616, retro_mdom_1987, retro_mdom_903,
Otolemur garnettii ENSOGAG00000011342 possible_ortholog 3 retrogenes
retro_ogar_2038, retro_ogar_265, retro_ogar_3453,
Procavia capensis ENSPCAG00000000733 ortholog_one2one 1 retrogene
retro_pcap_386,
Pteropus vampyrus ENSPVAG00000010218 ortholog_one2one 1 retrogene
retro_pvam_783,
Sorex araneus ENSSARG00000000117 ortholog_one2one 1 retrogene
retro_sara_575,
Sarcophilus harrisii ENSSHAG00000013119 ortholog_one2one 2 retrogenes
retro_shar_651, retro_shar_690,
Sus scrofa ENSSSCG00000012142 ortholog_one2one 1 retrogene
retro_sscr_998,
Ictidomys tridecemlineatus ENSSTOG00000008517 ortholog_one2many 1 retrogene
retro_itri_131,
Tupaia belangeri ENSTBEG00000008834 ortholog_one2one 2 retrogenes
retro_tbel_2173, retro_tbel_4575,
Tarsius syrichta ENSTSYG00000005290 ortholog_one2one 2 retrogenes
retro_tsyr_1953, retro_tsyr_854,
Vicugna pacos ENSVPAG00000007642 ortholog_one2one 1 retrogene
retro_vpac_596,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1308 86.34 100.00
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Download FASTA sequences of all ENSBTAG00000020420 retrocopies