RetrogeneDB ID: | retro_tsyr_261 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_6575:40845..41176(+) | ||
Located in intron of: | ENSTSYG00000005198 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2V1 | ||
Ensembl ID: | ENSTSYG00000002511 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 variant 1 [Source:HGNC Symbol;Acc:12494] |
Percent Identity: | 67.26 % |
Parental protein coverage: | 55.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | HRIHQVSPHKTYFCITTG--VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRT |
..I..V.........TTG..VKVP.NFRLLEEL.EGQKG.GDGTVSWGLE.DEDMTLT.WT.M..GPPRT | |
Retrocopy | YKIYDVVQQQRKMTATTGSGVKVPCNFRLLEELKEGQKGEGDGTVSWGLEEDEDMTLTKWTEMTTGPPRT |
Parental | IYENRIYSLKIECGPKYPEAPP-FVRFVT-KINMNGVNSSNGV |
.Y.N..YSL..ECGPKYPEAP..FVRFVT.KIN..G.NS.N.V | |
Retrocopy | SYGNQNYSLQTECGPKYPEAPA<FVRFVT<KINISGANSFNAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macaca mulatta | ENSMMUG00000012228 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000026172 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000025894 | 12 retrocopies | |
Pan troglodytes | ENSPTRG00000013615 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000025580 | 21 retrocopies |
retro_rnor_1014, retro_rnor_1032, retro_rnor_1291, retro_rnor_1609, retro_rnor_1649, retro_rnor_1650, retro_rnor_1651, retro_rnor_2055, retro_rnor_2282, retro_rnor_2406, retro_rnor_2407, retro_rnor_2412, retro_rnor_2488, retro_rnor_2489, retro_rnor_2490, retro_rnor_2534, retro_rnor_2535, retro_rnor_2905, retro_rnor_819, retro_rnor_881, retro_rnor_991,
|
Ictidomys tridecemlineatus | ENSSTOG00000014322 | 6 retrocopies | |
Tarsius syrichta | ENSTSYG00000002511 | 1 retrocopy |
retro_tsyr_261 ,
|