RetrogeneDB ID: | retro_rnor_2534 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:99827228..99827672(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2v1 | ||
Ensembl ID: | ENSRNOG00000025580 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 variant 1 [Source:RefSeq peptide;Acc:NP_001103815] |
Percent Identity: | 84.46 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE |
M.ATTGSGVKV.R.FRLLEEL.EGQKGV...TVS..LED.EDMTLTRWTGMIIGPP.TIYENRI.SLKIE | |
Retrocopy | MVATTGSGVKVLRDFRLLEELQEGQKGVVESTVS*DLEDYEDMTLTRWTGMIIGPP*TIYENRICSLKIE |
Parental | CGPK-YPEAPPSVRFVTRVNMSGVSSSNGVVDPRATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQP |
CGP..YPEA..SVRFV.RVNM.GVSSSNGVVDPRA.AVLAK.QNSH.IKVILQELR.LMMSKENMKLPQP | |
Retrocopy | CGPL*YPEASQSVRFVSRVNMNGVSSSNGVVDPRAMAVLAK*QNSHTIKVILQELRCLMMSKENMKLPQP |
Parental | PEGQCYSN |
PEGQCYS. | |
Retrocopy | PEGQCYSH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .19 RPM |
SRP017611_liver | 0 .00 RPM | 6 .99 RPM |