RetrogeneDB ID: | retro_rnor_819 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 11:1808024..1808465(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2v1 | ||
Ensembl ID: | ENSRNOG00000025580 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 variant 1 [Source:RefSeq peptide;Acc:NP_001103815] |
Percent Identity: | 80.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MAATTGSGVKVPRNFRLLEELEEGQKGVGDGT-VSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI |
MAATTG.GVKVP.NF.LLEELE..QK.VG.G..VSWGLED..DMTL.R..G.IIG.PRTIYEN.IY.LKI | |
Retrocopy | MAATTGLGVKVP*NF*LLEELEDSQKEVGKGK<VSWGLEDNKDMTLIR*KGVIIGSPRTIYENLIYNLKI |
Parental | ECGPKYPEAPP-SVRFVTRVNMSGVSSSNGVVDPRATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQ |
ECG.KY.EAPP.SVRFVTRVNMS.VSSS.GVVD.RA.AVLAKW.NSHSIKVILQELRRLMMSKE.MKLPQ | |
Retrocopy | ECGSKYLEAPP>SVRFVTRVNMSSVSSSSGVVDSRAMAVLAKWHNSHSIKVILQELRRLMMSKESMKLPQ |
Parental | PPEGQCYSN |
PPEGQCY.. | |
Retrocopy | PPEGQCYNH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .19 RPM |
SRP017611_liver | 0 .00 RPM | 6 .99 RPM |