RetrogeneDB ID: | retro_mmul_629 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:36686175..36686617(-) | ||
Located in intron of: | ENSMMUG00000017467 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.18639 | ||
Ensembl ID: | ENSMMUG00000012228 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 variant 1 [Source:RefSeq peptide;Acc:NP_001192013] |
Percent Identity: | 85.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE |
M.ATTGS..KVP.NF.LLEELEEGQKGVGD.TVSWGLED.EDMTLT.WTGMIIGPPRTIYEN.IYSLKIE | |
Retrocopy | MTATTGSLLKVPCNF*LLEELEEGQKGVGDDTVSWGLEDYEDMTLTTWTGMIIGPPRTIYEN*IYSLKIE |
Parental | CGPKYPEAPPFVRFVT-KINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQP |
.GPKY.E....VRFVT.KINMNGVNS.NG.VD.RAISVL.KWQNSYSIKVVLQELR.LMMSKENMKLPQP | |
Retrocopy | YGPKYSETXXXVRFVT>KINMNGVNSFNGGVDARAISVLSKWQNSYSIKVVLQELRHLMMSKENMKLPQP |
Parental | PEGQCYSN |
PEGQC.SN | |
Retrocopy | PEGQC*SN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 90 .20 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 97 .89 RPM |
SRP007412_cerebellum | 0 .13 RPM | 75 .94 RPM |
SRP007412_heart | 0 .06 RPM | 58 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 66 .67 RPM |
SRP007412_liver | 0 .00 RPM | 34 .40 RPM |
SRP007412_testis | 0 .04 RPM | 171 .54 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2440 |