RetrogeneDB ID:

retro_ogar_2984

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873693.1:653050..653472(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000025894
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_2984
GGAGTAAAAGTCCCTCGCAATTTCCGACTGTTGGAAGAACTCAAAGAAGGCCAGAAAGGAGTAGGAGATGGCACAGTTAA
CTGGCATCTAGAAGATGACTAAGACATGACACTTACAAGATGGACAGGGATGATAATTGGGCCTCCAAGAAAAATTTATG
AAAACCAAATATACAGCCTTTAAATAGAATGTGGACCTAAATACCCAGAAGCACCCCCCCTTTGTAAGATTTGTAACAAA
AATTAATATGAATGAAGTTAACAGTTCTAATGGAGTGATGGATCCAAGAGCCACACCAGTGCCAGCAAAATGGCAGAATT
CATATAGCATCAAAGTTGTCCTGCAAGAGCTTCAGCGCCTAATGATGTCTAAAGAAAAATATGAAACTCCTTCAGCCACA
TGAAGGACAGTGTTACAGCAAT

ORF - retro_ogar_2984 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.03 %
Parental protein coverage: 96.55 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE
GVKVPRNFRLLEEL.EGQKGVGDGTV.W.LEDD.DMTLTRWTGMIIGPPR.IYEN.IYSL.IECGPKYPE
RetrocopyGVKVPRNFRLLEELKEGQKGVGDGTVNWHLEDD*DMTLTRWTGMIIGPPRKIYENQIYSL*IECGPKYPE
ParentalA-PPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKE-NMKLPQPPEGQCY
A.PPFVRFVTKINMN.VNSSNGV.DPRA..V.AKWQNSYSIKVVLQEL.RLMMSKE.NMKL.QP.EGQCY
RetrocopyA>PPFVRFVTKINMNEVNSSNGVMDPRATPVPAKWQNSYSIKVVLQELQRLMMSKE>NMKLLQPHEGQCY
ParentalSN
SN
RetrocopySN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2984 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 95 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000273164 retrocopies
Canis familiaris ENSCAFG000000322448 retrocopies
Callithrix jacchus ENSCJAG0000003698410 retrocopies
Equus caballus ENSECAG000000118583 retrocopies
Homo sapiens ENSG000002446874 retrocopies
Loxodonta africana ENSLAFG000000273592 retrocopies
Macaca mulatta ENSMMUG000000122286 retrocopies
Mustela putorius furoENSMPUG000000175573 retrocopies
Nomascus leucogenys ENSNLEG000000069878 retrocopies
Oryctolagus cuniculus ENSOCUG000000261724 retrocopies
Otolemur garnettii ENSOGAG000000091321 retrocopy
Otolemur garnettii ENSOGAG00000025894 12 retrocopies
Pan troglodytes ENSPTRG000000136151 retrocopy
Rattus norvegicus ENSRNOG0000002558021 retrocopies
Sus scrofa ENSSSCG000000306321 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000143226 retrocopies
Tarsius syrichta ENSTSYG000000025111 retrocopy



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