Parental gene:

UBE2V1, ENSOCUG00000026172

Aliases:None
Description:ubiquitin-conjugating enzyme E2 variant 1 [Source:HGNC Symbol;Acc:12494]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL019399:37451..50691(-)


>ENSOCUG00000026172
ACAGCCTCTTCTCGAGGCATTTTAGGAGTAAAAGTCCCTCGCAATTTCCGACTGTTGGAAGAACTCGAAGAAGGCCAGAA
GGGAGTAGGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAGACATGACGCTTACGAGATGGACAGGGATGATAA
TTGGGCCTCCAAGAACAATTTACGAAAACAGAATATACAGCCTTAAAATAGAGTGTGGACCCAAATACCCAGAAGCGCCC
CCCTTTGTACGATTCGTAACAAAAATTAATATGAACGGAGTTAATAGTTCTAACGGAGTGGTGGACCCGAGAGCCATCTC
CGTGTTAGCGAAGTGGCAGAACTCGTACAGCATCCGAGTGGTGCTGCAGGAGCTGCGGCGCCTGCTGATGGCCAAGGAGA
ACATGAAGCTGCCTCAGCCGCCCGAGGGCCAGTGCTACAGCAACTGA

Library Parental gene expression (RPM)
SRP017611_liver 6 .24 RPM
SRP017611_kidney 25 .34 RPM
SRP017611_brain 24 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000027316 possible_ortholog 4 retrogenes
retro_btau_1196, retro_btau_1226, retro_btau_1307, retro_btau_415,
Canis familiaris ENSCAFG00000032244 possible_ortholog 8 retrogenes
retro_cfam_1005, retro_cfam_1066, retro_cfam_1299, retro_cfam_1340, retro_cfam_1499, retro_cfam_2186, retro_cfam_494, retro_cfam_604,
Callithrix jacchus ENSCJAG00000036984 possible_ortholog 10 retrogenes
retro_cjac_1076, retro_cjac_1952, retro_cjac_2810, retro_cjac_2865, retro_cjac_3081, retro_cjac_3140, retro_cjac_3258, retro_cjac_4089, retro_cjac_462, retro_cjac_974,
Loxodonta africana ENSLAFG00000027359 possible_ortholog 2 retrogenes
retro_lafr_1026, retro_lafr_1221,
Macaca mulatta ENSMMUG00000012228 possible_ortholog 6 retrogenes
retro_mmul_1722, retro_mmul_2382, retro_mmul_351, retro_mmul_436, retro_mmul_629, retro_mmul_907,
Mustela putorius furo ENSMPUG00000017557 possible_ortholog 3 retrogenes
retro_mputfur_1522, retro_mputfur_384, retro_mputfur_834,
Nomascus leucogenys ENSNLEG00000006987 possible_ortholog 8 retrogenes
retro_nleu_1554, retro_nleu_1612, retro_nleu_1996, retro_nleu_2206, retro_nleu_2773, retro_nleu_3025, retro_nleu_304, retro_nleu_566,
Oryctolagus cuniculus ENSOCUG00000006933 within_species_paralog 1 retrogene
retro_ocun_5,
Otolemur garnettii ENSOGAG00000025894 possible_ortholog 12 retrogenes
retro_ogar_1381, retro_ogar_1391, retro_ogar_153, retro_ogar_1637, retro_ogar_1929, retro_ogar_2027, retro_ogar_2478, retro_ogar_2984, retro_ogar_3172, retro_ogar_3338, retro_ogar_620, retro_ogar_80,
Pan troglodytes ENSPTRG00000013615 possible_ortholog 1 retrogene
retro_ptro_64,
Rattus norvegicus ENSRNOG00000025580 possible_ortholog 21 retrogenes
retro_rnor_1014, retro_rnor_1032, retro_rnor_1291, retro_rnor_1609, retro_rnor_1649, retro_rnor_1650, retro_rnor_1651, retro_rnor_2055, retro_rnor_2282, retro_rnor_2406, retro_rnor_2407, retro_rnor_2412, retro_rnor_2488, retro_rnor_2489, retro_rnor_2490, retro_rnor_2534, retro_rnor_2535, retro_rnor_2905, retro_rnor_819, retro_rnor_881, retro_rnor_991,
Sus scrofa ENSSSCG00000030632 possible_ortholog 1 retrogene
retro_sscr_431,
Ictidomys tridecemlineatus ENSSTOG00000014322 possible_ortholog 6 retrogenes
retro_itri_1001, retro_itri_1002, retro_itri_1134, retro_itri_1452, retro_itri_1600, retro_itri_992,
Tarsius syrichta ENSTSYG00000002511 ortholog_one2one 1 retrogene
retro_tsyr_261,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_454 64.29 93.92
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2. retro_ocun_539 71.08 56.08
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3. retro_ocun_1450 66.67 70.27
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4. retro_ocun_1481 66.06 72.30
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Download FASTA sequences of all ENSOCUG00000026172 retrocopies