Parental gene:

MMU.18639, ENSMMUG00000012228

Aliases:None
Description:ubiquitin-conjugating enzyme E2 variant 1 [Source:RefSeq peptide;Acc:NP_001192013]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:10:14316154..14393640(+)


>ENSMMUG00000012228
ATGGCGGGCGCCGAGGATGGGCCGGGCCAGCAGCTGGAGCTGGACGAGGACGAGGCGTCCTGTTGCCGCTGGGGCGCGCA
GCACGCTGGGGCCCGCGAGCTGGCTGCGCTCTACTCGCCAGGCAAGCGCCTCCAGGAGTGGTGCTCTGTGATCCTGTGCT
TCAGCCTCATCGCCCACAACCTGGTCCACCTCCTGCTGCTGGCCCGCTGGGAGCACACGCCCCTCGTCATAGTCGGTGTT
GTTGCAGGGGCTCTCATTGCTGACTTCTTATCTGGCCTGGTACACTGGGGTGCTGACACGTGGGGCTCCGTGGAGCTGCC
CATTGTGGGGAAGGCTTTCATCCGACCCTTCCGGGAGCACCACATTGACCCGACAGCTATCACACGGCACGACTTCATCG
AAACCAACGGGGACAACTGCCTGGTGACACTGCTGCCGCTGCTAAACATGGCCTACAAGTTCCGCACCCACAGCCCTGAA
GCCCTGGAGCAGCTCTACCCCTGGGAGTGCTTCGTCTTCTGCCTGATCATCTTCGGCACTTTCACCAACCAGATCCACAA
GTGGTCACACACGTACTTTGGGCTGCCACGCTGGGTCACTCTCCTGCAGGACTGGCATGTCATCCTGCCACGTAAACACC
ATCGCATCCACCACGTCTCACCCCACGAGACCTACTTCTGCATCACCACAGGAGTAAAAGTCCCTCGCAATTTCCGACTG
TTGGAAGAACTCGAAGAAGGCCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAGACATGAC
ACTTACAAGATGGACAGGGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAAT
GTGGACCTAAATACCCAGAAGCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATATGAATGGAGTAAATAGTTCTAAT
GGAGTGGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAAGAGCT
TCGGCGCCTAATGATGTCTAAAGAAAATATGAAACTCCCTCAGCCGCCCGAAGGACAGTGTTACAGCAATTAA

Library Parental gene expression (RPM)
SRP007412_brain 90 .20 RPM
SRP007412_brain_prefrontal_cortex 97 .89 RPM
SRP007412_cerebellum 75 .94 RPM
SRP007412_heart 58 .89 RPM
SRP007412_kidney 66 .67 RPM
SRP007412_liver 34 .40 RPM
SRP007412_testis 171 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000027316 possible_ortholog 4 retrogenes
retro_btau_1196, retro_btau_1226, retro_btau_1307, retro_btau_415,
Canis familiaris ENSCAFG00000032244 possible_ortholog 8 retrogenes
retro_cfam_1005, retro_cfam_1066, retro_cfam_1299, retro_cfam_1340, retro_cfam_1499, retro_cfam_2186, retro_cfam_494, retro_cfam_604,
Callithrix jacchus ENSCJAG00000036984 possible_ortholog 10 retrogenes
retro_cjac_1076, retro_cjac_1952, retro_cjac_2810, retro_cjac_2865, retro_cjac_3081, retro_cjac_3140, retro_cjac_3258, retro_cjac_4089, retro_cjac_462, retro_cjac_974,
Equus caballus ENSECAG00000011858 possible_ortholog 3 retrogenes
retro_ecab_1112, retro_ecab_250, retro_ecab_900,
Homo sapiens ENSG00000244687 possible_ortholog 4 retrogenes
retro_hsap_2175, retro_hsap_2440, retro_hsap_2884, retro_hsap_4192,
Loxodonta africana ENSLAFG00000027359 possible_ortholog 2 retrogenes
retro_lafr_1026, retro_lafr_1221,
Macaca mulatta ENSMMUG00000008223 within_species_paralog 1 retrogene
retro_mmul_1066,
Mustela putorius furo ENSMPUG00000017557 possible_ortholog 3 retrogenes
retro_mputfur_1522, retro_mputfur_384, retro_mputfur_834,
Nomascus leucogenys ENSNLEG00000006987 possible_ortholog 8 retrogenes
retro_nleu_1554, retro_nleu_1612, retro_nleu_1996, retro_nleu_2206, retro_nleu_2773, retro_nleu_3025, retro_nleu_304, retro_nleu_566,
Oryctolagus cuniculus ENSOCUG00000026172 possible_ortholog 4 retrogenes
retro_ocun_1450, retro_ocun_1481, retro_ocun_454, retro_ocun_539,
Otolemur garnettii ENSOGAG00000025894 possible_ortholog 12 retrogenes
retro_ogar_1381, retro_ogar_1391, retro_ogar_153, retro_ogar_1637, retro_ogar_1929, retro_ogar_2027, retro_ogar_2478, retro_ogar_2984, retro_ogar_3172, retro_ogar_3338, retro_ogar_620, retro_ogar_80,
Pan troglodytes ENSPTRG00000013615 possible_ortholog 1 retrogene
retro_ptro_64,
Rattus norvegicus ENSRNOG00000025580 possible_ortholog 21 retrogenes
retro_rnor_1014, retro_rnor_1032, retro_rnor_1291, retro_rnor_1609, retro_rnor_1649, retro_rnor_1650, retro_rnor_1651, retro_rnor_2055, retro_rnor_2282, retro_rnor_2406, retro_rnor_2407, retro_rnor_2412, retro_rnor_2488, retro_rnor_2489, retro_rnor_2490, retro_rnor_2534, retro_rnor_2535, retro_rnor_2905, retro_rnor_819, retro_rnor_881, retro_rnor_991,
Sus scrofa ENSSSCG00000030632 possible_ortholog 1 retrogene
retro_sscr_431,
Ictidomys tridecemlineatus ENSSTOG00000014322 possible_ortholog 6 retrogenes
retro_itri_1001, retro_itri_1002, retro_itri_1134, retro_itri_1452, retro_itri_1600, retro_itri_992,
Tarsius syrichta ENSTSYG00000002511 possible_ortholog 1 retrogene
retro_tsyr_261,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_351 95.24 100.00
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2. retro_mmul_436 72.48 100.00
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3. retro_mmul_629 85.14 100.00
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4. retro_mmul_907 81.82 80.95
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5. retro_mmul_1722 83.67 100.00
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6. retro_mmul_2382 85.14 100.00
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Download FASTA sequences of all ENSMMUG00000012228 retrocopies