RetrogeneDB ID: | retro_tsyr_529 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_133536:243..818(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTSYG00000003137 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 81.35 % |
Parental protein coverage: | 73.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVT |
IDGKVRTD.T...G...VISI.KTGENFRLI.DTKGR.AVHRITPEEAK.KLC..R.IFVGTKGIP.LVT | |
Retrocopy | IDGKVRTDTTCLTGLTNVISIAKTGENFRLIEDTKGRLAVHRITPEEAKFKLCNLRRIFVGTKGIPRLVT |
Parental | HDARTIRYPDPLIKVNDTIQIDLEAGKITDFIKFDTGNLCMVTGGANL-RIGVITNRERHPGS-FDVVHV |
HDARTIR.PDPLI.V..TI.IDLE.GKITDFIK.DTGNLCMVTGGA.L.RIGV.TNRERHPGS.FDVVHV | |
Retrocopy | HDARTIRSPDPLIEVKGTILIDLETGKITDFIKSDTGNLCMVTGGAHLGRIGVMTNRERHPGS<FDVVHV |
Parental | KDAYGNSFATRLSNIFVIDKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
KDA.GNSFATRLSNIFV..KGNK.WISLP..KGIRLT.AEERD.RLA.KQ.SG | |
Retrocopy | KDANGNSFATRLSNIFVTGKGNKLWISLP*RKGIRLTTAEERDRRLAVKQNSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014601 | 1 retrocopy | |
Bos taurus | ENSBTAG00000018800 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000017151 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000006337 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000008571 | 4 retrocopies | |
Equus caballus | ENSECAG00000010852 | 6 retrocopies | |
Homo sapiens | ENSG00000129824 | 1 retrocopy | |
Meleagris gallopavo | ENSMGAG00000009671 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011685 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000011070 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005294 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000011808 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000022470 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003201 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003137 | 16 retrocopies | |
Vicugna pacos | ENSVPAG00000010952 | 4 retrocopies |