RetrogeneDB ID: | retro_tsyr_1792 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_589031:2..540(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTSYG00000003137 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 69.02 % |
Parental protein coverage: | 69.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | YPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPD |
.P.GFMDVI.IDKTGENF.LI.DTKG.FAVH.IT.........K..K...GTKGIPHLVTHDART..YPD | |
Retrocopy | HPTGFMDVICIDKTGENFCLICDTKGHFAVHCITLRRLSTSCTK*EKS-LGTKGIPHLVTHDARTVCYPD |
Parental | PLIKVNDTIQID-LEAGKITDFIKFDTGNLCMVTGGANL-RIGVITNRERHPGSFDVVHVKDAYGNSFAT |
.LIK.NDT.Q.D.LE..KITDFIKF..GNL..VTGGANL.RIGV.T.RERHPGS.DVV.VK...GN.FAT | |
Retrocopy | LLIKGNDTVQAD<LETSKITDFIKFNIGNLPVVTGGANLERIGVNTHRERHPGSSDVVNVKETMGNTFAT |
Parental | RLSNIFVIDKGNKPWI-SLPRGKGIRLTIAEERDKRLAAKQSSG |
.L.NIFVI.KGNK.WI..LP......LTI..ERDKRLAAKQSSG | |
Retrocopy | QLVNIFVIGKGNKLWI<FLP*ARSFCLTIV-ERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014601 | 1 retrocopy | |
Bos taurus | ENSBTAG00000018800 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000017151 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000006337 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000008571 | 4 retrocopies | |
Equus caballus | ENSECAG00000010852 | 6 retrocopies | |
Homo sapiens | ENSG00000129824 | 1 retrocopy | |
Meleagris gallopavo | ENSMGAG00000009671 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011685 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000011070 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005294 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000011808 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000022470 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003201 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003137 | 16 retrocopies | |
Vicugna pacos | ENSVPAG00000010952 | 4 retrocopies |