RetrogeneDB ID: | retro_vpac_653 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_9930:45923..46439(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSVPAG00000010952 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 91.28 % |
Parental protein coverage: | 66.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MA.GPKKHLK.VAAP.HWMLDKLTGVFAPRPSTG.HKLRE.LPLIIFLRNRLKYALTGDEVKKICMQ.FI | |
Retrocopy | MAHGPKKHLKHVAAPNHWMLDKLTGVFAPRPSTGLHKLREYLPLIIFLRNRLKYALTGDEVKKICMQHFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKV.TDITYPAGFM.VISIDKT.ENF.LIYDTKGRFAVHRITPEEAKYKLCKVRKIFVG.K.IPHLV | |
Retrocopy | KIDGKVCTDITYPAGFMGVISIDKTEENFCLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGIKEIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDF |
THDA.TIRYPDPLIKVNDTIQIDLET.KI.DF | |
Retrocopy | THDACTIRYPDPLIKVNDTIQIDLETDKIIDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |