RetrogeneDB ID:

retro_ttru_1131

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_105148:26654..27223(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL19
Ensembl ID:ENSTTRG00000006687
Aliases:None
Description:ribosomal protein L19 [Source:HGNC Symbol;Acc:10312]


Retrocopy-Parental alignment summary:






>retro_ttru_1131
ATGAGTATGCTCAGGCTTCAGAAAAGGCTTGGCTTCGGTGTCCTCCGCTGTGGCAAAAAGAAGGTCTGGTTGGACCCCAA
TGAGACTAATGAAATTACCAATGCCAACTCCCATCAGCAGATCCGGAAGCTGATCAAAGGTGGGCTGATCATCTGGAAGC
CTGTGACAGTCCATTCCTTGAAATACACCTTGGCCCACCGGCAGGGCAGGCACATGGGCATAGGTAAGAGAAAGGGTGCT
ACCAATGCTCGAATGCCCGAGAAGGTAACCTGGTTGAGGAGGACGAGAATTCTGCGCCCGCTGCTCAGAAAATACCATCA
CTCTAAGAAGATTGACTGCCACGTGATCACAGCCTGTACCTGAAAGTGAAGGGTAAAGTGTTCAAAAACAAGCGGATTAT
CATGGAACATATCCACAAGCTGAAGGCAGACAAGGCTCGCAAGAAGCTGCTGGCGGACCAGGCTGAGGCCTGCAGGTCTA
AGACCAAGGAAGCCCAAAAGCGCGAAGAGCGGCTCCAGGCCAAGAAGGAGGAAATCGTCAAGGCTCTGTCCAAGGAGGAA
GAGACAAAG

ORF - retro_ttru_1131 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.06 %
Parental protein coverage: 99.49 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLAR
MSMLRLQKRL...VLRCGKKKVWLDPNETNEI.NANS.QQIRKLIK.GLII.KPVTVHS..........R
RetrocopyMSMLRLQKRLGFGVLRCGKKKVWLDPNETNEITNANSHQQIRKLIKGGLIIWKPVTVHSLKYTLAHRQGR
ParentalRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY-HSLYLKVKGNVFKNKRILM
..G....IGKRKG..NARMPEKVTW.RR.RILR.LLR.Y..SKKID.H...HSLYLKVKG.VFKNKRI.M
RetrocopyHMG----IGKRKGATNARMPEKVTWLRRTRILRPLLRKYHHSKKIDCHVI<HSLYLKVKGKVFKNKRIIM
ParentalEHIHKLKADKARKKLLADQAEARRSKSKEARKRREERLQAKKEEIIKTLSKEEETK
EHIHKLKADKARKKLLADQAEA.RSK.KEA.K.REERLQAKKEEI.K.LSKEEETK
RetrocopyEHIHKLKADKARKKLLADQAEACRSKTKEAQK-REERLQAKKEEIVKALSKEEETK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1131 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1131 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 135 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG0000001649314 retrocopies
Choloepus hoffmanni ENSCHOG000000060237 retrocopies
Callithrix jacchus ENSCJAG000000085204 retrocopies
Dasypus novemcinctus ENSDNOG000000197427 retrocopies
Equus caballus ENSECAG000000250806 retrocopies
Macropus eugenii ENSMEUG0000001390010 retrocopies
Macaca mulatta ENSMMUG000000042352 retrocopies
Mustela putorius furoENSMPUG000000150415 retrocopies
Nomascus leucogenys ENSNLEG0000000074819 retrocopies
Pongo abelii ENSPPYG0000000849220 retrocopies
Rattus norvegicus ENSRNOG0000000474137 retrocopies
Tursiops truncatus ENSTTRG00000006687 4 retrocopies



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