RetrogeneDB ID: | retro_dnov_1897 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_35884:11782..12361(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000019742 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MLRLQKRLASSVLRCGKK-KVWLDPNETNEIANANSRQHIRKLIKDGLIIRKPVTVHSRAR-CLKNTLAR |
MLRL.KRLASSVLRCGKK.KVWLDPNETNEIA.ANS...I.KLIKDGL.IRKP.TV.S..R...KNTLA. | |
Retrocopy | MLRLHKRLASSVLRCGKK>KVWLDPNETNEIASANSP*QIWKLIKDGLVIRKPMTVDSWTR<MAKNTLAH |
Parental | RKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGN-FKNRRILME |
.KGRHMGIGK.KGTANA.MP.KVTWMRRMR.L.RLLRRYRESK.ID.HMYHSLYLKVKGN.FKN..ILME | |
Retrocopy | WKGRHMGIGKQKGTANAHMPKKVTWMRRMRMLHRLLRRYRESK-IDCHMYHSLYLKVKGNVFKNKQILME |
Parental | HIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
.IHKLKADK..KKLLADQAEA.RSKTKEA.K..EERLQAKKEEIIKTLSKEE.TKK | |
Retrocopy | DIHKLKADKTHKKLLADQAEACRSKTKEACKCHEERLQAKKEEIIKTLSKEEDTKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 244 .06 RPM |
SRP012922_cerebellum | 0 .00 RPM | 191 .77 RPM |
SRP012922_heart | 0 .00 RPM | 126 .46 RPM |
SRP012922_kidney | 0 .00 RPM | 294 .88 RPM |
SRP012922_liver | 0 .00 RPM | 141 .18 RPM |
SRP012922_lung | 0 .00 RPM | 394 .64 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 184 .51 RPM |
SRP012922_spleen | 0 .00 RPM | 347 .62 RPM |