RetrogeneDB ID: | retro_dnov_1478 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_212841:521..884(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000019742 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.23 % |
Parental protein coverage: | 62.69 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | CLKNTLARR-KGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLR-RYRESKKIDRHMYHSLYLKVKGN |
C..NTL....KG.HMG..K.KGT.N..M.EKV..MRRM.IL..LL...Y..SK..D.H..HSL.LKVKGN | |
Retrocopy | CWENTLTAG<KGKHMGLRK*KGTGNT*MSEKVA*MRRMQILYQLLK>QYQDSKT-DHHIHHSLHLKVKGN |
Parental | -FKNRRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEI |
.FKNR.ILM.H.HKL.ADKARKKLLADQ...............EE.......E. | |
Retrocopy | VFKNRQILMDHMHKLGADKARKKLLADQTCFAGLRPGQVQVKKEEIIKTEWVEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 244 .06 RPM |
SRP012922_cerebellum | 0 .00 RPM | 191 .77 RPM |
SRP012922_heart | 0 .00 RPM | 126 .46 RPM |
SRP012922_kidney | 0 .00 RPM | 294 .88 RPM |
SRP012922_liver | 0 .00 RPM | 141 .18 RPM |
SRP012922_lung | 0 .00 RPM | 394 .64 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 184 .51 RPM |
SRP012922_spleen | 0 .00 RPM | 347 .62 RPM |