RetrogeneDB ID: | retro_dnov_1360 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_186733:330..756(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2E2 | ||
Ensembl ID: | ENSDNOG00000005448 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 2 [Source:HGNC Symbol;Acc:12478] |
Percent Identity: | 97.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYH |
IQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFS.DYPFKPPKVTFRTRIYH | |
Retrocopy | IQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYH |
Parental | CNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY |
CNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY.TNRAEHDR.ARQWTKRY | |
Retrocopy | CNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRY |
Parental | AT |
AT | |
Retrocopy | AT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 13 .03 RPM | 6 .81 RPM |
SRP012922_cerebellum | 36 .57 RPM | 13 .33 RPM |
SRP012922_heart | 6 .26 RPM | 5 .10 RPM |
SRP012922_kidney | 19 .99 RPM | 6 .84 RPM |
SRP012922_liver | 10 .37 RPM | 1 .24 RPM |
SRP012922_lung | 22 .60 RPM | 10 .23 RPM |
SRP012922_quadricep_muscle | 25 .79 RPM | 3 .98 RPM |
SRP012922_spleen | 27 .81 RPM | 11 .56 RPM |