RetrogeneDB ID: | retro_dnov_2508 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_81171:242..666(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2E2 | ||
Ensembl ID: | ENSDNOG00000005448 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 2 [Source:HGNC Symbol;Acc:12478] |
Percent Identity: | 81.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | IQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPP-KVTFRTRIY |
IQKEL.EI.LD.PPNCSAGPKGDNIYEWR.TI.GPPGSVYEGG.F.LDITFS.D.P.KPP.KVTF.TRIY | |
Retrocopy | IQKELVEIILDSPPNCSAGPKGDNIYEWR*TIFGPPGSVYEGGMFYLDITFSSDHPCKPP<KVTFHTRIY |
Parental | HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP-LVGSIATQYMTNRAEHDRMARQWTK |
HC.IN.QGVICLDILKDNWSP.LTISKV.LSICSLLTDCNP.DP.LVGSIATQY.T.R.E.DR..R.WT. | |
Retrocopy | HCKINNQGVICLDILKDNWSPSLTISKVWLSICSLLTDCNPEDP<LVGSIATQYLTKRVEPDRIPREWT* |
Parental | RYAT |
RYAT | |
Retrocopy | RYAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 6 .81 RPM |
SRP012922_cerebellum | 0 .14 RPM | 13 .33 RPM |
SRP012922_heart | 0 .00 RPM | 5 .10 RPM |
SRP012922_kidney | 0 .00 RPM | 6 .84 RPM |
SRP012922_liver | 0 .15 RPM | 1 .24 RPM |
SRP012922_lung | 0 .15 RPM | 10 .23 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 3 .98 RPM |
SRP012922_spleen | 0 .11 RPM | 11 .56 RPM |