RetrogeneDB ID: | retro_dnov_1217 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_16483:13484..13809(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2E2 | ||
Ensembl ID: | ENSDNOG00000005448 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2E 2 [Source:HGNC Symbol;Acc:12478] |
Percent Identity: | 75.68 % |
Parental protein coverage: | 76.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | KELAEITLDPPPNCSAGPKGDNIYEWRST-ILGPPGSVYEGGVFFLDITFS-PDYPF-KPPKVTFRTRIY |
K.L..ITLD.PPNCSAGPK..NIYEWR...ILG.P.S.Y.GGVFFLDITF.....PF.KPPK..F.TRIY | |
Retrocopy | K*LVDITLDSPPNCSAGPKSNNIYEWRES<ILGSPRSMYVGGVFFLDITFT>ENNPF>KPPKIMFWTRIY |
Parental | HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNP |
HCNI.SQGVICLDILKDNW..ALTISKVL.SICSLLTDC.P | |
Retrocopy | HCNIKSQGVICLDILKDNWNTALTISKVLFSICSLLTDCTP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 6 .81 RPM |
SRP012922_cerebellum | 0 .00 RPM | 13 .33 RPM |
SRP012922_heart | 0 .00 RPM | 5 .10 RPM |
SRP012922_kidney | 0 .00 RPM | 6 .84 RPM |
SRP012922_liver | 0 .00 RPM | 1 .24 RPM |
SRP012922_lung | 0 .15 RPM | 10 .23 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 3 .98 RPM |
SRP012922_spleen | 0 .11 RPM | 11 .56 RPM |