RetrogeneDB ID: | retro_vpac_96 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1781:86984..87367(-) | ||
Located in intron of: | ENSVPAG00000002937 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H3F3B | ||
Ensembl ID: | ENSVPAG00000011531 | ||
Aliases: | None | ||
Description: | H3 histone, family 3B (H3.3B) [Source:HGNC Symbol;Acc:4765] |
Percent Identity: | 82.95 % |
Parental protein coverage: | 94.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RKSTGGKAPRKQLATKAARKSAPSTGGV-KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQ |
RK.TGG.A.RKQLATKAARK.APSTGG..K..HRYRPGT.ALRE.RRY.KS.ELLIRK.PFQ..VREIAQ | |
Retrocopy | RKPTGGDARRKQLATKAARKRAPSTGGG<KERHRYRPGTGALREMRRYRKSAELLIRKPPFQGPVREIAQ |
Parental | DFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
DFKTDLRFQSAAIGALQEASEAYLVGL.EDTNLCA..AK.VTIMP.DIQLA.R.RGERA | |
Retrocopy | DFKTDLRFQSAAIGALQEASEAYLVGLSEDTNLCAVPAKCVTIMPEDIQLACRVRGERA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009661 | 10 retrocopies | |
Loxodonta africana | ENSLAFG00000021624 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000015447 | 10 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000024644 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008636 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024226 | 8 retrocopies | |
Vicugna pacos | ENSVPAG00000011531 | 5 retrocopies |