miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001340
species: Lactuca serriola
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Lactuca serriola Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTTCCCAATTCCGCCCATTC

miRNA*
 GTCGCAGGGTTTGGAAGGAA

mismatches: 4
bulges: 1
View larger
pre-miRNA
 AGTTAGCCAAGGAGTCGCAGGGTTTGGAAGGAACATTAGCGGTTTATTCAAGCACGCCATCATGGTCGGGAAACGTGTTCGAACTGAAACCAAAATCGCC
GAAGGAGCAGTTTCCGTCAGCTCAGCCGCCGTGGAGTTAGCCCTAATGAAACTTCCCAATTCCGCCCATTCCACCGCTAGA

dot-bracket secondary structure
..(((((...(((((.((.(((((.(((((...((((((.((((..((((.((..((.....(((.((((((..((.((((...(((........))).)
)))...))..))))))))).....)).))..))))...))))))))))...))))).))))).))..)))))...))))).


SIMILARITIES
miRBase pvu-MIR482: 0.0001

PMRD pvu-miR482: 0.0001

microPC miR482: 0.0001		UniProt sp|P93111|HEM11_CUCSA: 4e-16

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;