miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001340
species: Lactuca serriola
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Lactuca serriola Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACTTCCCAATTCCGCCCATTC

miRNA*
GTCGCAGGGTTTGGAAGGAA

mismatches: 4
bulges: 1

View larger
pre-miRNA
AGTTAGCCAAGGAGTCGCAGGGTTTGGAAGGAACATTAGCGGTTTATTCAAGCACGCCATCATGGTCGGGAAACGTGTTCGAACTGAAACCAAAATCGCC
GAAGGAGCAGTTTCCGTCAGCTCAGCCGCCGTGGAGTTAGCCCTAATGAAACTTCCCAATTCCGCCCATTCCACCGCTAGA


dot-bracket secondary structure
..(((((...(((((.((.(((((.(((((...((((((.((((..((((.((..((.....(((.((((((..((.((((...(((........))).)
)))...))..))))))))).....)).))..))))...))))))))))...))))).))))).))..)))))...))))).



SIMILARITIES
miRBase pvu-MIR482: 0.0001

PMRD pvu-miR482: 0.0001

microPC miR482: 0.0001
UniProt sp|P93111|HEM11_CUCSA: 4e-16

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;