miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001340
species: Lactuca serriola
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Lactuca serriola Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACTTCCCAATTCCGCCCATTC

miRNA*
GTCGCAGGGTTTGGAAGGAA

mismatches: 4
bulges: 1

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pre-miRNA
AGTTAGCCAAGGAGTCGCAGGGTTTGGAAGGAACATTAGCGGTTTATTCAAGCACGCCATCATGGTCGGGAAACGTGTTCGAACTGAAACCAAAATCGCC
GAAGGAGCAGTTTCCGTCAGCTCAGCCGCCGTGGAGTTAGCCCTAATGAAACTTCCCAATTCCGCCCATTCCACCGCTAGA


dot-bracket secondary structure
..(((((...(((((.((.(((((.(((((...((((((.((((..((((.((..((.....(((.((((((..((.((((...(((........))).)
)))...))..))))))))).....)).))..))))...))))))))))...))))).))))).))..)))))...))))).



SIMILARITIES
miRBase pvu-MIR482: 0.0001

PMRD pvu-miR482: 0.0001

microPC miR482: 0.0001
UniProt sp|P93111|HEM11_CUCSA: 4e-16

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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