ABOUT THIS RECORDspecies: Nicotiana langsdorffii x Nicotiana sanderae
miRNA family: MIRf73
source: miRNEST
Taxonomy by NCBI:
Nicotiana langsdorffii x Nicotiana sanderae Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCATTTGGTACCATGAGGTTC miRNA* ACCCATCAAGGTACCAGTTGGCT mismatches: 2 bulges: 2 |
pre-miRNA
GTATGCTCCAAAACTGGAGGTCCATTTGGTACCATGAGGTTCAAGGCTGAGCTAAGCCATGGCGCCAATGACGGCGCTGACATTGCCATCAGGCTATTGG
AACCCATCAAGGTACCAGTTGGCTGGAGTGGTTGCTGTTGAA
dot-bracket secondary structure
.....(((((....)))))..(((.((((((((.((((((((..((((......))))..((((((......))))))..((..(((....)))...)))
))))..))).)))))))).)))....(((....)))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTATGCTCCAAAACTGGAGGTCCATTTGGTACCATGAGGTTCAAGGCTGAGCTAAGCCATGGCGCCAATGACGGCGCTGACATTGCCATCAGGCTATTGG
AACCCATCAAGGTACCAGTTGGCTGGAGTGGTTGCTGTTGAA
dot-bracket secondary structure
.....(((((....)))))..(((.((((((((.((((((((..((((......))))..((((((......))))))..((..(((....)))...)))
))))..))).)))))))).)))....(((....)))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P48534|APX1_PEA: 0.0000000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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