miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST001612
species: Nicotiana langsdorffii x Nicotiana sanderae
miRNA family: MIRf73
source: miRNEST

Taxonomy by NCBI:
Nicotiana langsdorffii x Nicotiana sanderae Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCATTTGGTACCATGAGGTTC

miRNA*
ACCCATCAAGGTACCAGTTGGCT

mismatches: 2
bulges: 2

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pre-miRNA
GTATGCTCCAAAACTGGAGGTCCATTTGGTACCATGAGGTTCAAGGCTGAGCTAAGCCATGGCGCCAATGACGGCGCTGACATTGCCATCAGGCTATTGG
AACCCATCAAGGTACCAGTTGGCTGGAGTGGTTGCTGTTGAA


dot-bracket secondary structure
.....(((((....)))))..(((.((((((((.((((((((..((((......))))..((((((......))))))..((..(((....)))...)))
))))..))).)))))))).)))....(((....)))......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|P48534|APX1_PEA: 0.0000000005

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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