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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001612
species: Nicotiana langsdorffii x Nicotiana sanderae
miRNA family: MIRf73
source: miRNEST

Taxonomy by NCBI:
Nicotiana langsdorffii x Nicotiana sanderae Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCATTTGGTACCATGAGGTTC

miRNA*
 ACCCATCAAGGTACCAGTTGGCT

mismatches: 2
bulges: 2
View larger
pre-miRNA
 GTATGCTCCAAAACTGGAGGTCCATTTGGTACCATGAGGTTCAAGGCTGAGCTAAGCCATGGCGCCAATGACGGCGCTGACATTGCCATCAGGCTATTGG
AACCCATCAAGGTACCAGTTGGCTGGAGTGGTTGCTGTTGAA

dot-bracket secondary structure
.....(((((....)))))..(((.((((((((.((((((((..((((......))))..((((((......))))))..((..(((....)))...)))
))))..))).)))))))).)))....(((....)))......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P48534|APX1_PEA: 0.0000000005

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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