ABOUT THIS RECORDspecies: Parthenium argentatum
miRNA family: MIRf28
source: miRNEST
Taxonomy by NCBI:
Parthenium argentatum Parthenium Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTTGGTGTCGGTCGACACAG miRNA* TTGTCAAGCCTACACCAAATGC mismatches: 5 bulges: 1 |
pre-miRNA
CCAGAATTAGCCCTTGGTGTCGGTCGACACAGGGATGCCGGTGCTTTAACCATCTTGGCTCAAGACGCTGTAGGTGGTTTAGAAGTTAAACGAAAAACCG
ATGGAGAGTGGATCTTTGTCAAGCCTACACCAAATGCTTTCATTA
dot-bracket secondary structure
...(((..(((..(((((((.(((.((((.(((..((((((((((((((((((((((((.......)))).))))))))..)))))..........))))
.......)))..))).))))..))).)))))))..))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCAGAATTAGCCCTTGGTGTCGGTCGACACAGGGATGCCGGTGCTTTAACCATCTTGGCTCAAGACGCTGTAGGTGGTTTAGAAGTTAAACGAAAAACCG
ATGGAGAGTGGATCTTTGTCAAGCCTACACCAAATGCTTTCATTA
dot-bracket secondary structure
...(((..(((..(((((((.(((.((((.(((..((((((((((((((((((((((((.......)))).))))))))..)))))..........))))
.......)))..))).))))..))).)))))))..))))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q05964|FL3H_DIACA: 0.0000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
