miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001874
species: Parthenium argentatum
miRNA family: MIRf28
source: miRNEST

Taxonomy by NCBI:
Parthenium argentatum Parthenium Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTTGGTGTCGGTCGACACAG

miRNA*
TTGTCAAGCCTACACCAAATGC

mismatches: 5
bulges: 1

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pre-miRNA
CCAGAATTAGCCCTTGGTGTCGGTCGACACAGGGATGCCGGTGCTTTAACCATCTTGGCTCAAGACGCTGTAGGTGGTTTAGAAGTTAAACGAAAAACCG
ATGGAGAGTGGATCTTTGTCAAGCCTACACCAAATGCTTTCATTA


dot-bracket secondary structure
...(((..(((..(((((((.(((.((((.(((..((((((((((((((((((((((((.......)))).))))))))..)))))..........))))
.......)))..))).))))..))).)))))))..))))))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q05964|FL3H_DIACA: 0.0000001

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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