miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002326
species: Raphanus raphanistrum
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACAATGGATTGGACAATGGCT

miRNA*
 CCATTCTTATGGATTTATTTGTA

mismatches: 4
bulges: 2
View larger
pre-miRNA
 AAACACATCAGAGCCATTCTTATGGATTTATTTGTAGCAGGCATAGACACATCTGCAATAACAATGGATTGGACAATGGCTGAGATTGCAA

dot-bracket secondary structure
......(((..(((((((.((...(((((((((((.(((((..........))))).)))..)))))))).)).)))))))..))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|O65787|C71B6_ARATH: 0.0000002

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;