miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002326
species: Raphanus raphanistrum
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACAATGGATTGGACAATGGCT

miRNA*
CCATTCTTATGGATTTATTTGTA

mismatches: 4
bulges: 2

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pre-miRNA
AAACACATCAGAGCCATTCTTATGGATTTATTTGTAGCAGGCATAGACACATCTGCAATAACAATGGATTGGACAATGGCTGAGATTGCAA

dot-bracket secondary structure
......(((..(((((((.((...(((((((((((.(((((..........))))).)))..)))))))).)).)))))))..))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|O65787|C71B6_ARATH: 0.0000002

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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