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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST002326
species:
Raphanus raphanistrum
source:
miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum
Raphanus
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACAATGGATTGGACAATGGCT
miRNA*
CCATTCTTATGGATTTATTTGTA
mismatches:
4
bulges:
2
View larger
pre-miRNA
AAACACATCAGAG
CCATTCTTATGGATTTATTTGTA
GCAGGCATAGACACATCTGCAATA
ACAATGGATTGGACAATGGCT
GAGATTGCAA
dot-bracket secondary structure
......(((..((
(((((.((...(((((((((((.
(((((..........))))).)))
..)))))))).)).)))))))
..))).....
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|O65787|C71B6_ARATH: 0.0000002
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record