ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIRf52
source: miRNEST
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCGTTTGCGGGTGGTAGCG miRNA* CAAACGCCCGCAACCGCAAAC mismatches: 5 bulges: 0 |
pre-miRNA
TTTATCCTCCCGCAAACGCCCGCAACCGCAAACGCTAGCTGGAACCAGCTTTTGAATTTATGAGGTTCAGAGCGATTTGGAGCGATTTGGAGCGGTTTAG
AGCGGTTTGAGCGATTGTTGCAAAACGCCAGCAACCGCTACCAACCGCAAAAGCTGCGTTTGCGGGTGGTAGCGGGAAAACCA
dot-bracket secondary structure
.......((((((...(((((((((.((((..(((.(((((....)))))((((((((.....))))))))))).((((((....))))))((((((...
(((((((...((...((((....))))...)))))))))...))))))......)))).)))))))))...))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTTATCCTCCCGCAAACGCCCGCAACCGCAAACGCTAGCTGGAACCAGCTTTTGAATTTATGAGGTTCAGAGCGATTTGGAGCGATTTGGAGCGGTTTAG
AGCGGTTTGAGCGATTGTTGCAAAACGCCAGCAACCGCTACCAACCGCAAAAGCTGCGTTTGCGGGTGGTAGCGGGAAAACCA
dot-bracket secondary structure
.......((((((...(((((((((.((((..(((.(((((....)))))((((((((.....))))))))))).((((((....))))))((((((...
(((((((...((...((((....))))...)))))))))...))))))......)))).)))))))))...))))))......
SIMILARITIES| miRBase no hits PMRD ath-miRf11089-akr: 0.00000000000004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
