miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000236
species: Brassica napus
miRNA family: MIRf52
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGCGTTTGCGGGTGGTAGCG

miRNA*
CAAACGCCCGCAACCGCAAAC

mismatches: 5
bulges: 0

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pre-miRNA
TTTATCCTCCCGCAAACGCCCGCAACCGCAAACGCTAGCTGGAACCAGCTTTTGAATTTATGAGGTTCAGAGCGATTTGGAGCGATTTGGAGCGGTTTAG
AGCGGTTTGAGCGATTGTTGCAAAACGCCAGCAACCGCTACCAACCGCAAAAGCTGCGTTTGCGGGTGGTAGCGGGAAAACCA


dot-bracket secondary structure
.......((((((...(((((((((.((((..(((.(((((....)))))((((((((.....))))))))))).((((((....))))))((((((...
(((((((...((...((((....))))...)))))))))...))))))......)))).)))))))))...))))))......



SIMILARITIES
miRBase no hits

PMRD ath-miRf11089-akr: 0.00000000000004

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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