miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000236
species: Brassica napus
miRNA family: MIRf52
source: miRNEST

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGCGTTTGCGGGTGGTAGCG

miRNA*
CAAACGCCCGCAACCGCAAAC

mismatches: 5
bulges: 0

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pre-miRNA
TTTATCCTCCCGCAAACGCCCGCAACCGCAAACGCTAGCTGGAACCAGCTTTTGAATTTATGAGGTTCAGAGCGATTTGGAGCGATTTGGAGCGGTTTAG
AGCGGTTTGAGCGATTGTTGCAAAACGCCAGCAACCGCTACCAACCGCAAAAGCTGCGTTTGCGGGTGGTAGCGGGAAAACCA


dot-bracket secondary structure
.......((((((...(((((((((.((((..(((.(((((....)))))((((((((.....))))))))))).((((((....))))))((((((...
(((((((...((...((((....))))...)))))))))...))))))......)))).)))))))))...))))))......



SIMILARITIES
miRBase no hits

PMRD ath-miRf11089-akr: 0.00000000000004

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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