ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGTCAATATC miRNA* TATTGGCCTGGTTCATTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
TAGCACTAGAGAGTCCTCTTTGATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAA
TATCTCAGTGCTCTCTCGTCTCTC
dot-bracket secondary structure
....((.(((((((...((..(((((((((.(((((((.((((((.((.............................)).)))))).))))))).)))))
))))..)).))))))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAGCACTAGAGAGTCCTCTTTGATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAA
TATCTCAGTGCTCTCTCGTCTCTC
dot-bracket secondary structure
....((.(((((((...((..(((((((((.(((((((.((((((.((.............................)).)))))).))))))).)))))
))))..)).))))))).)).....
SIMILARITIES| miRBase bra-MIR171e: 0.000000000000002 PMRD bna-miR171g: 7e-18 microPC miR171: 2e-42 | UniProt no hits RFAM MIR171_1: 0.000000000008 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST046581) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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