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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002375
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGCGTCAATATC

miRNA*
 TATTGGCCTGGTTCATTCAGA

mismatches: 2
bulges: 0
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pre-miRNA
 TAGCACTAGAGAGTCCTCTTTGATATTGGCCTGGTTCATTCAGATCTTCCCGACCAAACCACGCAACAACTCTCTTAGATATCTGATTGAGCCGCGTCAA
TATCTCAGTGCTCTCTCGTCTCTC

dot-bracket secondary structure
....((.(((((((...((..(((((((((.(((((((.((((((.((.............................)).)))))).))))))).)))))
))))..)).))))))).)).....


SIMILARITIES
miRBase bra-MIR171e: 0.000000000000002

PMRD bna-miR171g: 7e-18

microPC miR171: 2e-42		UniProt no hits

RFAM MIR171_1: 0.000000000008		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST046581)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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