miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Antirrhinum majus
,
Fraxinus excelsior
,
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
,
Ocimum basilicum
,
Salvia miltiorrhiza
,
Striga hermonthica
,
Triphysaria pusilla
,
Triphysaria versicolor
ABOUT THIS RECORD
ID:
MNEST002683
species:
Striga hermonthica
miRNA family:
MIR414
source:
miRNEST
Taxonomy by NCBI:
Striga hermonthica
Striga
Buchnereae
Orobanchaceae
Lamiales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCATCTTCATCTTCATCGTGG
miRNA*
ACATGGTATGAAGCTGAGC
mismatches:
3
bulges:
2
View larger
pre-miRNA
GATCT
TCATCTTCATCTTCATCGTGG
CCTAAACCTAGGGTTTGCTCCAATTCCTTCCTATCTTTAATCCCAATTCCTAAACGTATCTATAATCCGGAGTG
AACATATATGCAGCCGCCGAACGTAATCCTGCCGCCGCCGCCGCCGCCGTTTGCTATATAATATCGTTTCTTTCGCGAATCGATTCATGATTTGGGAATT
ATCAGTTATGATTATCCCCGTCGAATTTCAATTCTCATCGTC
ACATGGTATGAAGCTGAGC
TA
dot-bracket secondary structure
....(
(((.((((((..((((.(((.
((((....))))(((((((((..........(((.((((...........)))).)))..........))))))
))).(((((((((.((.((...........((.((....)).)))).)).)))).)))))..((((.(((......))).))))..(((((.((((.((.
((((....)))).)).))))..((((....))))..))))))
)))))).)))))).)))).
..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record