ABOUT THIS RECORDspecies: Macaca nemestrina
miRNA family: mir-9
source: miRBase, original name: mne-mir-9 (MI0002572)
Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTGGTTATCTAGCTGTATGA miRNA* ATAAAGCTAGATAACCGAAAGTA mismatches: 3 bulges: 0 |
pre-miRNA
AGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCA
dot-bracket secondary structure
).((((.(((((.(((..(((((((((((((((.((((((..(....)..)))))).)))))))))))))))..))).))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
AGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCA
dot-bracket secondary structure
).((((.(((((.(((..(((((((((((((((.((((((..(....)..)))))).)))))))))))))))..))).))))))))).
SIMILARITIES| miRBase age-mir-9: 3.0E-44 PMRD no hits microPC no hits | UniProt no hits RFAM 9mir-9: 2.0E-17 |
Identical with: mml-mir-9-2 from miRBase (MNEST027646), cfa-mir-9-2 from miRBase , ptr-mir-9-2 from miRBase , bta-mir-9-2 from miRBase , mmu-mir-9-2 from miRBase , ggo-mir-9 from miRBase , hsa-mir-9-2 from miRBase , oan-mir-9-2 from miRBase , rno-mir-9-2 from miRBase , lla-mir-9 from miRBase , age-mir-9 from miRBase , eca-mir-9a-2 from miRBase , ssc-mir-9-2 from miRBase , rno-mir-3597-2 from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
