ABOUT THIS RECORDspecies: Zinnia violacea
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Zinnia violacea Zinnia Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACATCATCATCATCATCTTCT miRNA* TGATGATGATGATGATTTG mismatches: 1 bulges: 2 |
pre-miRNA
GCCTTGTCACAACATCATCATCATCATCTTCTTCTTGTTGTTCTTCCACTTCAACAACATCTTTATTTGCATCTAATTCATGTTCTTCTGCTTTGCCTTT
ATTCCCACCTTGTTTCTTGTGGTCAAGATTCAATGAACCCGGTTCACAATTGTTGACAGAAGCTGGATTCCTTGACACCCACCTGGGATTTCTTTGGATT
CGAGTGGTGGTGGTGATGATGATGATGATTTGGGATCAAC
dot-bracket secondary structure
.(((.((((...((((((((((((((((..((.((((..((((..((((...(((((......((...(((......................)))...)
)........)))))....))))..((((.((((.(((.((((((................)))))).))).))))..(((....)))...)))).)))).
)))).)).)))))))))))))))).))))..)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCCTTGTCACAACATCATCATCATCATCTTCTTCTTGTTGTTCTTCCACTTCAACAACATCTTTATTTGCATCTAATTCATGTTCTTCTGCTTTGCCTTT
ATTCCCACCTTGTTTCTTGTGGTCAAGATTCAATGAACCCGGTTCACAATTGTTGACAGAAGCTGGATTCCTTGACACCCACCTGGGATTTCTTTGGATT
CGAGTGGTGGTGGTGATGATGATGATGATTTGGGATCAAC
dot-bracket secondary structure
.(((.((((...((((((((((((((((..((.((((..((((..((((...(((((......((...(((......................)))...)
)........)))))....))))..((((.((((.(((.((((((................)))))).))).))))..(((....)))...)))).)))).
)))).)).)))))))))))))))).))))..)))......
SIMILARITIES| miRBase no hits PMRD ghr-miR414f: 0.0000002 microPC no hits | UniProt no hits RFAM mir-598: 0.000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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