ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: mir-9
source: miRBase, original name: ppc-mir-9 (MI0011248)
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTGGTTATCTAGCTGTATG miRNA* TAAAGCTGGAAAACTGAAGGAA mismatches: 5 bulges: 0 |
pre-miRNA
TTCCTTCAATGGGACAGTCATTATCGTCTCTTTGGTTATCTAGCTGTATGATTTGAAATGTAAATCATAAAGCTGGAAAACTGAAGGAACGATGTGTCTC
ATGGA
dot-bracket secondary structure
.(((....((((((((.....((((((..(((..(((.(((((((.(((((((((.....))))))))).))))))).)))..)))..))))))))))))
)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
TTCCTTCAATGGGACAGTCATTATCGTCTCTTTGGTTATCTAGCTGTATGATTTGAAATGTAAATCATAAAGCTGGAAAACTGAAGGAACGATGTGTCTC
ATGGA
dot-bracket secondary structure
.(((....((((((((.....((((((..(((..(((.(((((((.(((((((((.....))))))))).))))))).)))..)))..))))))))))))
)))))
SIMILARITIES| miRBase cte-mir-79: 0.000000005 PMRD no hits microPC no hits | UniProt no hits RFAM mir-9: 2e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"
