miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST038597
species: Pristionchus pacificus
miRNA family: mir-9
source: miRBase, original name: ppc-mir-9 (MI0011248)

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTTGGTTATCTAGCTGTATG

miRNA*
TAAAGCTGGAAAACTGAAGGAA

mismatches: 5
bulges: 0

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pre-miRNA
TTCCTTCAATGGGACAGTCATTATCGTCTCTTTGGTTATCTAGCTGTATGATTTGAAATGTAAATCATAAAGCTGGAAAACTGAAGGAACGATGTGTCTC
ATGGA


dot-bracket secondary structure
.(((....((((((((.....((((((..(((..(((.(((((((.(((((((((.....))))))))).))))))).)))..)))..))))))))))))
)))))



SIMILARITIES
miRBase cte-mir-79: 0.000000005

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 2e-27

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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