miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pristionchus pacificus



ABOUT THIS RECORD

ID: MNEST038597
species: Pristionchus pacificus
miRNA family: mir-9
source: miRBase, original name: ppc-mir-9 (MI0011248)

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTTGGTTATCTAGCTGTATG

miRNA*
TAAAGCTGGAAAACTGAAGGAA

mismatches: 5
bulges: 0

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pre-miRNA
TTCCTTCAATGGGACAGTCATTATCGTCTCTTTGGTTATCTAGCTGTATGATTTGAAATGTAAATCATAAAGCTGGAAAACTGAAGGAACGATGTGTCTC
ATGGA


dot-bracket secondary structure
.(((....((((((((.....((((((..(((..(((.(((((((.(((((((((.....))))))))).))))))).)))..)))..))))))))))))
)))))



SIMILARITIES
miRBase cte-mir-79: 0.000000005

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-9: 2e-27

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] de Wit E, Linsen SE, Cuppen E, Berezikov E, Genome Res. 19:2064-2074(2009)., "Repertoire and evolution of miRNA genes in four divergent nematode species"




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