ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR157
source: miRBase, original name: bra-MIR157a (MI0010648)
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATACTTCTGTCACCA mismatches: 2 bulges: 1 |
pre-miRNA
GTGATGCTGGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACATATGTATGTATCATCACACCGCCTGTGGATGATTACAAAAATAGC
CTGCATGTCTACTCTTTCGTGCTCTCTATACTTCTGTCACCACCATTAT
dot-bracket secondary structure
((((((.((((....(((((((((((((((((((.(((((.((((((((.((...(((...(((((((((.(((.....)))))))).))))...)))))
.))))))))...))))).))))))))))).)))))))))))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
GTGATGCTGGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACATATGTATGTATCATCACACCGCCTGTGGATGATTACAAAAATAGC
CTGCATGTCTACTCTTTCGTGCTCTCTATACTTCTGTCACCACCATTAT
dot-bracket secondary structure
((((((.((((....(((((((((((((((((((.(((((.((((((((.((...(((...(((((((((.(((.....)))))))).))))...)))))
.))))))))...))))).))))))))))).)))))))))))).))))))
SIMILARITIES| miRBase bna-MIR156b: 1e-50 PMRD bra-miR157a: 5e-81 microPC miR157: 2e-40 | UniProt no hits RFAM no hits |
Identical with: bra-miR157a from PMRD (MNEST048393) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
