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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040310
species: Brassica rapa
miRNA family: MIR157
source: miRBase, original name: bra-MIR157a (MI0010648)

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGATAGAGAGCAC

miRNA*
 GCTCTCTATACTTCTGTCACCA

mismatches: 2
bulges: 1
View larger
pre-miRNA
 GTGATGCTGGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACATATGTATGTATCATCACACCGCCTGTGGATGATTACAAAAATAGC
CTGCATGTCTACTCTTTCGTGCTCTCTATACTTCTGTCACCACCATTAT

dot-bracket secondary structure
((((((.((((....(((((((((((((((((((.(((((.((((((((.((...(((...(((((((((.(((.....)))))))).))))...)))))
.))))))))...))))).))))))))))).)))))))))))).))))))


SIMILARITIES
miRBase bna-MIR156b: 1e-50

PMRD bra-miR157a: 5e-81

microPC miR157: 2e-40		UniProt no hits

RFAM no hits

Identical with: bra-miR157a from PMRD (MNEST048393)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"



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