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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST040310
species: Brassica rapa
miRNA family: MIR157
source: miRBase, original name: bra-MIR157a (MI0010648)

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC

miRNA*
GCTCTCTATACTTCTGTCACCA

mismatches: 2
bulges: 1

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pre-miRNA
GTGATGCTGGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACATATGTATGTATCATCACACCGCCTGTGGATGATTACAAAAATAGC
CTGCATGTCTACTCTTTCGTGCTCTCTATACTTCTGTCACCACCATTAT


dot-bracket secondary structure
((((((.((((....(((((((((((((((((((.(((((.((((((((.((...(((...(((((((((.(((.....)))))))).))))...)))))
.))))))))...))))).))))))))))).)))))))))))).))))))



SIMILARITIES
miRBase bna-MIR156b: 1e-50

PMRD bra-miR157a: 5e-81

microPC miR157: 2e-40
UniProt no hits

RFAM no hits

Identical with: bra-miR157a from PMRD (MNEST048393)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"




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