ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR167
source: miRBase, original name: sbi-MIR167c (MI0001555)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATGTTGCAGCTTCACT mismatches: 0 bulges: 1 |
pre-miRNA
CTTTGCTGGTGTGAGAGGTTGAAGCTGCCAGCATGATCTGGTGGCCGGCCGGCCGGCGTCTCTCAAGTGCGCTCGGATCGGAGACGCGTCGCCAGATCAT
GTTGCAGCTTCACTCTCTCGCAACCACCAAA
dot-bracket secondary structure
..(((.(((((((((((..(((((((((.((((((((((((((((((.(((((((((((((....)).)))).))).))))...)).)))))))))))))
))))))))))))..))))))).)))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CTTTGCTGGTGTGAGAGGTTGAAGCTGCCAGCATGATCTGGTGGCCGGCCGGCCGGCGTCTCTCAAGTGCGCTCGGATCGGAGACGCGTCGCCAGATCAT
GTTGCAGCTTCACTCTCTCGCAACCACCAAA
dot-bracket secondary structure
..(((.(((((((((((..(((((((((.((((((((((((((((((.(((((((((((((....)).)))).))).))))...)).)))))))))))))
))))))))))))..))))))).)))).))).
SIMILARITIES| miRBase zma-MIR167h: 0.00000000000003 PMRD sbi-miR167c: 2e-64 microPC miR167: 0.000002 | UniProt no hits RFAM MIR167_1: 2e-61 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
