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Species belonging to selected taxon:
Sorghum propinquum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST042521
species:
Sorghum bicolor
miRNA family:
MIR167
source:
miRBase, original name:
sbi-MIR167c
(
MI0001555
)
Taxonomy by NCBI:
Sorghum bicolor
Sorghum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG
miRNA*
GATCATGTTGCAGCTTCACT
mismatches:
0
bulges:
1
View larger
pre-miRNA
CTTTGCTGGTGTGAGAGGT
TGAAGCTGCCAGCATGATCTG
GTGGCCGGCCGGCCGGCGTCTCTCAAGTGCGCTCGGATCGGAGACGCGTCGCCA
GATCAT
GTTGCAGCTTCACT
CTCTCGCAACCACCAAA
dot-bracket secondary structure
..(((.(((((((((((..
(((((((((.(((((((((((
(((((((.(((((((((((((....)).)))).))).))))...)).)))))))
))))))
))))))))))))..
))))))).)))).))).
SIMILARITIES
miRBase
zma-MIR167h
:
0.00000000000003
PMRD
sbi-miR167c
:
2e-64
microPC
miR167
:
0.000002
UniProt
no hits
RFAM
MIR167_1: 2e-61
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"