miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cynodon dactylon, Eragrostis curvula, Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042523
species: Sorghum bicolor
miRNA family: MIR167
source: miRBase, original name: sbi-MIR167e (MI0001554)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GGTCATGCTGTAGTTTCATC

mismatches: 0
bulges: 1
View larger
pre-miRNA
 TAGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGTCTTTATATATATTAATTACCTCTGATTTCTCCCTGACTGTTATGGATCGATGAAT
TCAGATATGAGGGGAAGGAAGAAAGAGGAATAATGAGCATCAGGTCATGCTGTAGTTTCATCCGCTGGTGGGAGCACAT

dot-bracket secondary structure
)....((((.((((.(((.(((((((((((.((((((((((((((.(((.......((((.((.(((((..(((((((((...((((.(((((......))
)))))))...)))).)))))...))))))))))))))))))))))))))))))))))))))).))).))))..))))..


SIMILARITIES
miRBase sof-MIR167b: 4.0E-42

PMRD sbi-miR167e: 7.0E-99

microPC miR167: 2.0E-25		UniProt no hits

RFAM 1MIR167_1: 3.0E-89

Identical with: sbi-miR167e from PMRD (MNEST054431)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



Liczniki na strone;